PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016652557.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 490aa    MW: 55005.8 Da    PI: 7.2664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016652557.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11308355355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h ++Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  XP_016652557.1 308 STHVKAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 355
                     68*************************6.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.7E-4222218IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.656305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-17308368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9308354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16308370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.87E-13308359No hitNo description
SMARTSM003531.7E-14311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEDIISPCSS PNFCHENSAT FQQRLQFIVQ NRPEWWAYSI FWQASKDSND QVVLSWAGGH  60
FKSSRDFAFK RSNKMTNNYQ PKFGFSNVER KKVNNREVEV LFDEEDMVDL DMSLVDHGVG  120
DVTDSEWFYF YTVSLTQSFA AGHGNNSILG RAFCSGGFVW LAGDHELQFY ECERVKEARM  180
HGIQTLVCVA TPCGVLELAS LYVIKEDWGL VQLSKSLFES DNNRVSKQGS HDGNVLVSLL  240
ENEMFSGGQK DLTRQECGVK EATPVNIGGS SSDSPSDSVG NFTSANAKNI RLKKRGRSSN  300
HGTGKESSTH VKAERQRREK LNHRFYVLRS VVPNVSKMDR SSLLADAVAY INQLKEKVEE  360
LEAKIQAQTQ NPKVGHVSNL DHYHHHSSQS TGSIVDHRSS SYNINKAGAA LEVDVKILGS  420
EAMIRVQCPD QDYPYAKLMN ALKALGFQVY HASISSVKEL MIQDVVARVP YGFNSEKAVK  480
MGIIKIWYIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-25112182192Transcription factor MYC3
4rqw_B4e-25112182192Transcription factor MYC3
4rs9_A4e-25112182192Transcription factor MYC3
4yz6_A4e-25112182192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291297LKKRGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245388.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM5WS220.0M5WS22_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11400.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-61bHLH family protein